LEMMI
Methods that completely or partially failed the LEMMI evaluation
# Clark/Clark-S.
Require more than 245GB to build the minimal one representative per species database and does not provide pre-processed indexes to test as bundled reference, to our knowledge.
Clark is however included in LEMMI from beta01.20191007 in its light "Clark-l" version.
Can be discussed here: https://gitlab.com/ezlab/lemmi/issues/12 (opens new window)
# Kraken 1 building a database
Require more than 245GB to build the minimal one representative per species database. Therefore, is only evaluated with the pre-built Minikraken database.
Can be discussed here: https://gitlab.com/ezlab/lemmi/issues/1 (opens new window)
# kASA
Attempts to benchmark this tool so far have failed owing to excessive runtime.
Can be discussed here: https://gitlab.com/ezlab/lemmi/issues/10 (opens new window)